debian/0000755000000000000000000000000011772075217007177 5ustar debian/changelog0000644000000000000000000000260511772075217011054 0ustar getdp (2.2.0-1) unstable; urgency=low * New upstream release -- Christophe Trophime Sun, 24 Jun 2012 19:26:57 +0200 getdp (2.1.2~beta2~svn2364-1) unstable; urgency=low * Update to svn rev 2364 * Remove unneeded patches * debian/rules: - rewrite rules for getdp-sparskit (add --disable-gmsh) - simplify rules * Update the minimal version of hdf5 * Update dependencies to libpetsc3.2-dev & libslepc3.2-dev * Standards-Version updated to version 3.9.3 -- Christophe Trophime Fri, 25 May 2012 08:13:31 +0200 getdp (2.1.0-1) unstable; urgency=low * New upstream release * debian/control : Add getdp-sparkit package Add libpsparskit-dev to Build-Depends Add texlive, texlive-generic-recommended, texinfo, install-info to Build-Depends Remove dpkg from Build-Depends * debian/rules : Remove Arpack, Sparskit from orig tarball -- Christophe Trophime Mon, 25 Oct 2010 09:41:45 +0200 getdp (2.1.0~svn2026-1) unstable; urgency=low * Update to svn rev 2026 -- Christophe Trophime Mon, 18 Oct 2010 09:35:33 +0200 getdp (2.0.0-1) unstable; urgency=low * Initial release (Closes: #502615) -- Christophe Trophime Thu, 14 Oct 2010 09:54:46 +0200 debian/docs0000644000000000000000000000001311707047444010043 0ustar README.txt debian/control0000644000000000000000000000370311771621626010605 0ustar Source: getdp Section: math Priority: extra Maintainer: Debian Science Team Uploaders: Christophe Trophime Build-Depends: quilt, cdbs, debhelper (>= 7), autotools-dev, automake, autoconf, gfortran, mpi-default-dev, libarpack2-dev, libgsl0-dev, libscotchmetis-dev, libpetsc3.2-dev, libslepc3.2-dev, libhdf5-openmpi-dev (>= 1.8.8), gmsh, texlive, texlive-generic-recommended, texinfo, install-info Standards-Version: 3.9.3 Homepage: http://www.geuz.org/getdp Vcs-Svn: svn://svn.debian.org/svn/debian-science/packages/getdp/trunk/ Vcs-Browser: http://svn.debian.org/viewsvn/debian-science/packages/getdp/trunk/ Package: getdp Architecture: any Depends: ${shlibs:Depends}, ${misc:Depends}, dpkg (>= 1.15.4) | install-info Description: general environment for the treatment of discrete problems GetDP is a general finite element solver using mixed elements to discretize de Rham-type complexes in one, two and three dimensions. . The main feature of GetDP is the closeness between the input data defining discrete problems (written by the user in ASCII data files) and the symbolic mathematical expressions of these problems. . See GetDP's reference manual for a more thorough overview of GetDP's capabilities: http://www.geuz.org/getdp Package: getdp-sparskit Architecture: any Depends: ${shlibs:Depends}, ${misc:Depends} Description: general environment for the treatment of discrete problems GetDP is a general finite element solver using mixed elements to discretize de Rham-type complexes in one, two and three dimensions. . The main feature of GetDP is the closeness between the input data defining discrete problems (written by the user in ASCII data files) and the symbolic mathematical expressions of these problems. . See GetDP's reference manual for a more thorough overview of GetDP's capabilities: http://www.geuz.org/getdp . Getdp is compiled with SPARSKIT support debian/compat0000644000000000000000000000000211455533134010370 0ustar 7 debian/dirs0000644000000000000000000000001011455533134010045 0ustar usr/bin debian/getdp.install0000644000000000000000000000023711707047444011673 0ustar debian/tmp/usr/bin/getdp debian/tmp/usr/share/man/man1/getdp.1 debian/tmp/usr/share/info/getdp* doc/getdp.html usr/share/doc/getdp demos usr/share/doc/getdp debian/patches/0000755000000000000000000000000011771621626010626 5ustar debian/patches/slepc3.2.patch0000644000000000000000000000450611762426245013205 0ustar Index: getdp-2.1.2~beta2~svn2274/Legacy/EigenSolve.cpp =================================================================== --- getdp-2.1.2~beta2~svn2274.orig/Legacy/EigenSolve.cpp 2012-02-14 15:42:55.000000000 +0100 +++ getdp-2.1.2~beta2~svn2274/Legacy/EigenSolve.cpp 2012-02-14 15:42:56.000000000 +0100 @@ -7,7 +7,7 @@ #include "Message.h" #include "EigenSolve.h" -#if (PETSC_VERSION_RELEASE == 0) // petsc-dev +#if (PETSC_VERSION_RELEASE == 0 || ((PETSC_VERSION_MAJOR == 3) && (PETSC_VERSION_MINOR == 2))) // // petsc-dev #define PetscTruth PetscBool #define PetscOptionsGetTruth PetscOptionsGetBool #endif Index: getdp-2.1.2~beta2~svn2274/Legacy/EigenSolve_SLEPC.cpp =================================================================== --- getdp-2.1.2~beta2~svn2274.orig/Legacy/EigenSolve_SLEPC.cpp 2012-02-14 15:42:55.000000000 +0100 +++ getdp-2.1.2~beta2~svn2274/Legacy/EigenSolve_SLEPC.cpp 2012-02-14 15:46:10.000000000 +0100 @@ -162,7 +162,7 @@ Current.TimeImag = im; } -#if (PETSC_VERSION_RELEASE == 0) // petsc-dev +#if (PETSC_VERSION_RELEASE == 0 || ((PETSC_VERSION_MAJOR == 3) && (PETSC_VERSION_MINOR == 2))) // petsc-dev _try(VecDestroy(&xr)); _try(VecDestroy(&xi)); #else @@ -258,7 +258,7 @@ Message::Error("SLEPc diverged after %d iterations", its); else if(reason == EPS_DIVERGED_BREAKDOWN) Message::Error("SLEPc generic breakdown in method"); -#if !(PETSC_VERSION_RELEASE == 0) // petsc-dev +#if !(PETSC_VERSION_RELEASE == 0 || ((PETSC_VERSION_MAJOR == 3) && (PETSC_VERSION_MINOR == 2))) // petsc-dev else if(reason == EPS_DIVERGED_NONSYMMETRIC) Message::Error("The operator is nonsymmetric"); #endif @@ -274,7 +274,7 @@ // print eigenvalues and store eigenvectors in DofData _storeEigenVectors(DofData_P, nconv, eps, PETSC_NULL); -#if (PETSC_VERSION_RELEASE == 0) // petsc-dev +#if (PETSC_VERSION_RELEASE == 0 || ((PETSC_VERSION_MAJOR == 3) && (PETSC_VERSION_MINOR == 2))) // petsc-dev _try(EPSDestroy(&eps)); #else _try(EPSDestroy(eps)); @@ -389,7 +389,7 @@ // print eigenvalues and store eigenvectors in DofData _storeEigenVectors(DofData_P, nconv, PETSC_NULL, qep); -#if (PETSC_VERSION_RELEASE == 0) // petsc-dev +#if (PETSC_VERSION_RELEASE == 0 || ((PETSC_VERSION_MAJOR == 3) && (PETSC_VERSION_MINOR == 2))) // petsc-dev _try(QEPDestroy(&qep)); #else _try(QEPDestroy(qep)); debian/patches/configure.diff0000644000000000000000000000321111707047444013435 0ustar Index: getdp-2.1.1~svn2227/configure.in =================================================================== --- getdp-2.1.1~svn2227.orig/configure.in 2012-01-17 15:30:29.861973181 +0100 +++ getdp-2.1.1~svn2227/configure.in 2012-01-17 15:45:59.837934072 +0100 @@ -55,7 +55,7 @@ [use SLEPc eigensolvers (default=yes)])) AC_ARG_ENABLE(sparskit, AC_HELP_STRING([--enable-sparskit], - [use Sperskit linear solvers (default=no)])) + [use Sparskit linear solvers (default=no)])) AC_ARG_ENABLE(zitsol, AC_HELP_STRING([--enable-zitsol], [enable support for ZITSOL (default=no)])) @@ -222,12 +222,21 @@ dnl Check for Arpack if test "x$enable_fortran" != "xno"; then if test "x$enable_arpack" != "xno" -a "x${LAPACK}" = "xyes"; then - AC_CHECK_FILE(./contrib/Arpack/znaupd.f, ARPACK="yes", ARPACK="no") - if test "x${ARPACK}" = "xyes"; then - AC_DEFINE(HAVE_ARPACK) - BO="${BO} Arpack" - GETDP_DIRS="${GETDP_DIRS} contrib/Arpack" - GETDP_LIBS="${GETDP_LIBS} -lGetDPArpack" + AC_LANG_PUSH(Fortran) + AC_CHECK_LIB(arpack,znaupd,ARPACK="yes",ARPACK="no") + AC_LANG_POP() + if test "x${ARPACK}" = "xno"; then + AC_CHECK_FILE(./contrib/Arpack/znaupd.f, ARPACK="yes", ARPACK="no") + if test "x${ARPACK}" = "xyes"; then + AC_DEFINE(HAVE_ARPACK) + BO="${BO} Arpack" + GETDP_DIRS="${GETDP_DIRS} contrib/Arpack" + GETDP_LIBS="${GETDP_LIBS} -lGetDPArpack" + fi + else + GETDP_LIBS="${GETDP_LIBS} -larpack" + AC_DEFINE(HAVE_ARPACK) + BO="${BO} Arpack" fi fi fi debian/patches/Makefile.diff0000644000000000000000000000315111707047444013174 0ustar Index: getdp-2.1.1~svn2227/Makefile =================================================================== --- getdp-2.1.1~svn2227.orig/Makefile 2012-01-03 09:34:51.000000000 +0100 +++ getdp-2.1.1~svn2227/Makefile 2012-01-17 16:30:54.465820750 +0100 @@ -27,11 +27,11 @@ @for i in ${GETDP_DIRS}; do (cd $$i && ${MAKE}); done install: variables - mkdir -p ${bindir} - cp -f bin/getdp${EXEEXT} ${bindir} - chmod 755 ${bindir}/getdp${EXEEXT} - mkdir -p ${mandir}/man1 - cp -f doc/getdp.1 ${mandir}/man1 + mkdir -p $(DESTDIR)${bindir} + cp -f bin/getdp${EXEEXT} $(DESTDIR)${bindir} + chmod 755 $(DESTDIR)${bindir}/getdp${EXEEXT} + mkdir -p $(DESTDIR)${mandir}/man1 + cp -f doc/getdp.1 $(DESTDIR)${mandir}/man1 variables: configure @echo "********************************************************************" @@ -52,6 +52,7 @@ clean: for i in doc lib demos ${GETDP_DIRS}; do (cd $$i && ${MAKE} clean); done rm -f ${GETDP_VERSION_FILE} + rm -f bin/getdp${EXEEXT} depend: initialtag mv -f Common/GetDPConfig.h . Index: getdp-2.1.1~svn2227/doc/texinfo/Makefile =================================================================== --- getdp-2.1.1~svn2227.orig/doc/texinfo/Makefile 2012-01-03 09:34:51.000000000 +0100 +++ getdp-2.1.1~svn2227/doc/texinfo/Makefile 2012-01-17 16:30:54.465820750 +0100 @@ -13,8 +13,9 @@ makeinfo --split-size 1000000 getdp.texi install-info: - cp getdp.info* /usr/info/ - install-info getdp.info /usr/info/dir + mkdir -p $(DESTDIR)/usr/share/info/ + cp getdp.info* $(DESTDIR)/usr/share/info/ + install-info getdp.info $(DESTDIR)/usr/share/info/dir infoz: info tar zcvf getdp-info.tgz getdp.info* debian/patches/fix_latest_svn.patch0000644000000000000000000000061511762426245014701 0ustar --- getdp-2.1.2~beta2~svn2304.orig/Legacy/Operation_IterativeLinearSolver.cpp.orig 2012-03-08 21:43:16.000000000 +0100 +++ getdp-2.1.2~beta2~svn2304/Legacy/Operation_IterativeLinearSolver.cpp 2012-03-08 21:44:33.000000000 +0100 @@ -9,6 +9,7 @@ #include "GetDPConfig.h" #include "ProData.h" #include "SolvingOperations.h" +#include "Message.h" #if defined(HAVE_PETSC) && defined(HAVE_GMSH) debian/patches/series0000644000000000000000000000010311771621626012035 0ustar Makefile.diff configure.diff #slepc3.2.patch #fix_latest_svn.patch debian/getdp-sparskit.10000644000000000000000000000405511707047444012225 0ustar .\" $Id: getdp.1,v 1.33 2008-07-10 10:21:48 geuzaine Exp $ .TH GetDP 1 "July 10 2008" "GetDP 2" "GetDP Manual Pages" .UC 4 .\" ******************************************************************** .SH NAME GetDP \- a General environment for the treatment of Discrete Problems .\" ******************************************************************** .SH SYNOPSIS .B getdp-sparskit [file] [options] .\" ******************************************************************** .SH DESCRIPTION \fIGetDP\fP is a general finite element solver using mixed elements to discretize de Rham-type complexes in one, two and three dimensions. The main feature of \fIGetDP\fP is the closeness between the input data defining discrete problems (written by the user in ASCII data files) and the symbolic mathematical expressions of these problems. .PP \fIGetDP\fP is a command-line program. See \fIGmsh\fP for a graphical front-end. .PP \fIgetdp-sparskit\fP is \fIGetDP\fP version compiled with sparskit support. .\" ******************************************************************** .SH WARNING This man page does not describe the syntax of the input files: you should refer to the info documentation for this (e.g. with \fBinfo getdp\fP). Up-to-date versions of the manual in various formats are available at \fIhttp://www.geuz.org/getdp/\fP. .\" ******************************************************************** .\" ******************************************************************** .SH AUTHORS Patrick Dular (patrick.dular at ulg.ac.be) and Christophe Geuzaine (cgeuzaine at ulg.ac.be). See the documentation for a comprehensive list of contributors. .\" ******************************************************************** .SH SEE ALSO .BR getdp (1), .BR .BR gmsh (1), .BR GetDP examples (\fI/usr/share/doc/getdp-*/\fR), .BR GetDP homepage (\fIhttp://www.geuz.org/getdp/\fR). .PP The full documentation for GetDP is maintained as a Texinfo manual. If the .B info and .B getdp programs are properly installed at your site, the command .IP .B info getdp .PP should give you access to the complete manual. debian/watch0000644000000000000000000000021011455533134010214 0ustar version=3 opts=uversionmangle=s/-([^-]+)/.$1/,dversionmangle=s/\.dfsg$// \ http://www.geuz.org/getdp/src/ getdp-([\d.-]+)-source\.tgz debian/rules0000755000000000000000000000373711762426245010271 0ustar #!/usr/bin/make -f DEB_AUTO_CLEANUP_RCS := yes DEB_AUTO_UPDATE_ACLOCAL := 1.11 DEB_AUTO_UPDATE_AUTOCONF := 1 DEB_COMPRESS_EXCLUDE := .pdf .svn include /usr/share/cdbs/1/class/autotools.mk include /usr/share/cdbs/1/rules/debhelper.mk include /usr/share/cdbs/1/rules/patchsys-quilt.mk # PETSC_DIR is the location of PETSc. export PETSC_DIR=/usr/lib/petscdir/3.2 export PETSC_ARCH=linux-gnu-c-opt export SLEPC_DIR=/usr/lib/slepcdir/3.2 #DEB_MAKE_ENVVARS := -j2 #DEB_CONFIGURE_EXTRA_FLAGS := --enable-metis DEB_CONFIGURE_EXTRA_FLAGS := DEB_CONFIGURE_SCRIPT_ENV += F77="gfortran" DEB_STRIPPED_UPSTREAM_VERSION = $(shell echo $(DEB_UPSTREAM_VERSION) | sed -n -e 's/\.dfsg.*$$//p') install/getdp:: echo "installing getdp" $(MAKE) install DESTDIR=$(CURDIR)/debian/tmp cd doc/texinfo && $(MAKE) pdf html info LC_ALL=C cd doc/texinfo && $(MAKE) install-info DESTDIR=$(CURDIR)/debian/tmp install/getdp-sparskit:: echo "installing getdp-sparskit" make clean rm -rf Common/GetDPVersion.h rm -rf Common/GetDPConfig.h $(DEB_CONFIGURE_INVOKE) $(cdbs_configure_flags) $(DEB_CONFIGURE_EXTRA_FLAGS) $(DEB_CONFIGURE_USER_FLAGS) --enable-sparskit --disable-gmsh $(MAKE) mv bin/getdp bin/getdp-sparskit clean:: find . \( -name "*.o" -o -name "*.a" \) -delete rm -rf bin/getdp bin/getdp-sparskit rm -rf Common/GetDPVersion.h rm -rf Common/GetDPConfig.h rm -rf variables configure rm -rf config.guess config.sub config.status config.log .PHONY: get-orig-source get-orig-source: set -ex ; \ mkdir -p tmp ; \ uscan --force-download --symlink --check-dirname-level 0 --destdir tmp ; \ tar -C tmp -xzf tmp/$(DEB_SOURCE_PACKAGE)-$(DEB_UPSTREAM_VERSION)-source.tgz ; \ rm -rf tmp/getdp-$(DEB_UPSTREAM_VERSION)/contrib/Arpack ; \ GZIP=-9 tar -C tmp -czf \ $(CURDIR)/$(DEB_SOURCE_PACKAGE)_$(DEB_UPSTREAM_VERSION).orig.tar.gz \ $(DEB_SOURCE_PACKAGE)-$(DEB_UPSTREAM_VERSION) ; \ rm -rf tmp debian/README.source0000644000000000000000000000353511455533134011357 0ustar This package uses quilt to manage all modifications to the upstream source. Changes are stored in the source package as diffs in debian/patches and applied during the build. To configure quilt to use debian/patches instead of patches, you want either to export QUILT_PATCHES=debian/patches in your environment or use this snippet in your ~/.quiltrc: for where in ./ ../ ../../ ../../../ ../../../../ ../../../../../; do if [ -e ${where}debian/rules -a -d ${where}debian/patches ]; then export QUILT_PATCHES=debian/patches break fi done To get the fully patched source after unpacking the source package, cd to the root level of the source package and run: quilt push -a The last patch listed in debian/patches/series will become the current patch. To add a new set of changes, first run quilt push -a, and then run: quilt new where is a descriptive name for the patch, used as the filename in debian/patches. Then, for every file that will be modified by this patch, run: quilt add before editing those files. You must tell quilt with quilt add what files will be part of the patch before making changes or quilt will not work properly. After editing the files, run: quilt refresh to save the results as a patch. Alternately, if you already have an external patch and you just want to add it to the build system, run quilt push -a and then: quilt import -P /path/to/patch quilt push -a (add -p 0 to quilt import if needed). as above is the filename to use in debian/patches. The last quilt push -a will apply the patch to make sure it works properly. To remove an existing patch from the list of patches that will be applied, run: quilt delete You may need to run quilt pop -a to unapply patches first before running this command. debian/copyright0000644000000000000000000000434111707047444011133 0ustar This package was debianized by Christophe Trophime on Thu, 27 Aug 2009 13:09:50 +0200. It was downloaded from http://www.geuz.org/getdp Upstream Authors: Patrick Dular Christophe Geuzaine Copyright: copyright (C) 1997-2008 by P. Dular and C. Geuzaine License: /usr/share/common-licenses/GPL-2 File: Common/GmshSocket.h: Copyright: 1997-2010 C. Geuzaine, J.-F. Remacle License: Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, provided that the above copyright notice(s) and this permission notice appear in all copies of the Software and that both the above copyright notice(s) and this permission notice appear in supporting documentation. File: Common/avl.h Common/avl.cpp Copyright: 1988-1993, The Regents of the University of California. License: Permission to use, copy, modify, and distribute this software and its documentation for any purpose and without fee is hereby granted, provided that the above copyright notice appear in all copies and that both that copyright notice and this permission notice appear in supporting documentation, and that the name of the University of California not be used in advertising or publicity pertaining to distribution of the software without specific, written prior permission. The University of California makes no representations about the suitability of this software for any purpose. It is provided "as is" without express or implied warranty. File: Interface/ProParser.tab.hpp Interface/ProParser.tab.cpp (generated files) Copyright: 1984, 1989, 1990, 2000, 2001, 2002, 2003, 2004, 2005, 2006 Free Software Foundation, Inc. License: /usr/share/common-licenses/GPL-2 The Debian packaging is (C) 2009, Christophe Trophime and is licensed under the GPL, see `/usr/share/common-licenses/GPL'. debian/README.Debian0000644000000000000000000000160711707047444011243 0ustar getdp for Debian ---------------- Options for PETSc can be provided on the command line, or in the file ~/.petscrc. By default we try to use the MUMPS or UMFPACK direct solver (if available, with PETSc 3). Otherwise we use a GMRES iterative solver preconditionned with an ILU(6). All these options can be changed at runtime. For example you could use -pc_type ilu -pc_factor_levels 0 -ksp_rtol 1.e-6 -ksp_gmres_restart 500 -ksp_monitor for GMRES with ILU(0), with a restart of 500 and a stopping criterion of 1e-6. Or you could set -pc_type lu -pc_factor_mat_solver_package mumps -ksp_type gmres to use the MUMPS direct solver as a preconditioner to GMRES (useful e.g if the matrix changed a bit, but you want to keep the same factorization using "SolveAgain"). -- Christophe Trophime Thu, 27 Aug 2009 13:09:50 +0200 debian/source/0000755000000000000000000000000011707047444010476 5ustar debian/source/format0000644000000000000000000000001411707047444011704 0ustar 3.0 (quilt) debian/getdp-get-orig-source-svn.sh0000755000000000000000000000111311771621626014452 0ustar #!/bin/bash -x export GMSH_VERSION=$1 if test "$GMSH_VERSION" == ""; then echo "please provide the version" exit 42 fi mkdir -p tmp (cd tmp && svn co --username getdp --password getdp https://geuz.org/svn/getdp/trunk getdp) pwd ls tmp export GMSH_VERSION=$(echo $1~svn$(cd tmp/getdp && svnversion .)) echo "Building getdp_$GMSH_VERSION.orig.tar.gz" (cd tmp && mv getdp getdp-$GMSH_VERSION-1) (cd tmp && tar --exclude-vcs -czf getdp_$GMSH_VERSION.orig.tar.gz getdp-$GMSH_VERSION-1) (cd tmp && rm -rf getdp-$GMSH_VERSION) (cd tmp && mv getdp_$GMSH_VERSION.orig.tar.gz ..) rm -rf tmp debian/getdp-sparskit.install0000644000000000000000000000010611707047444013524 0ustar debian/getdp-sparskit.1 usr/share/man/man1 bin/getdp-sparskit usr/bin